Price Information
| Cat No. | Plasmid Name | Availability | Add to cart |
|---|---|---|---|
| V006993 | E1b-GFP-Tol2 | In stock, 1 week for quality controls |
Buy one, get one free! |
Two tubes of lyophilized plasmid will be delivered, each tube is about 5µg.
Basic Vector Information
- Vector Name:
- E1b-GFP-Tol2
- Antibiotic Resistance:
- Ampicillin
- Length:
- 7602 bp
- Type:
- Zebrafish enhancer assay vector
- Replication origin:
- ori
- Copy Number:
- High Copy
- Promoter:
- E1b
- Cloning Method:
- Restriction Enzyme
- 5' Primer:
- GATGCGGGAAGAGGTGTATTAGT
- 3' Primer:
- AGTTCTCAGGATCGGTCGAAAT
E1b-GFP-Tol2 vector Map
Plasmid Protocol
1. Centrifuge at 5,000×g for 5 min.
2. Carefully open the tube and add 20 μl of sterile water to dissolve the DNA.
3. Close the tube and incubate for 10 minutes at room temperature.
4. Briefly vortex the tube and then do a quick spin to concentrate the liquid at the bottom. Speed is less than 5000×g.
5. Store the plasmid at -20 ℃.
6. The concentration of plasmid re-measurement sometimes differs from the nominal value, which may be due to the position of the lyophilized plasmid in the tube, the efficiency of the re-dissolution, the measurement bias, and adsorption on the wall of the tube, therefore, it is recommended to transform and extract the plasmid before using it
General Plasmid Transform Protocol
1. Take one 100μl of the competent cells and thaw it on ice for 10min, add 2μl of plasmid, then ice bath for 30min, then heat-shock it at 42℃ for 60s, do not stir, and then ice bath for 2min.
2. Add 900μl of LB liquid medium without antibiotics, and incubate at 37℃ for 45min (30℃ for 1-1.5 hours) with 180rpm shaking.
3. Centrifuge at 6000rpm for 5min, leave only 100μl of supernatant to resuspend the bacterial precipitate and spread it onto the target plasmid-resistant LB plate.
4. Invert the plate and incubate at 37℃ for 14h, or at 30℃ for 20h.
5. Pick a single colony into LB liquid medium, add the corresponding antibiotics, incubate at 220rpm for 14h, and extract the plasmid according to the experimental needs and the instructions of the plasmid extraction kit.
E1b-GFP-Tol2 vector Sequence
LOCUS 40924_710 7602 bp DNA circular SYN 13-MAY-2021
DEFINITION synthetic circular DNA.
ACCESSION .
VERSION .
KEYWORDS .
SOURCE synthetic DNA construct
ORGANISM synthetic DNA construct
REFERENCE 1 (bases 1 to 7602)
AUTHORS Birnbaum RY, Clowney EJ, Agamy O, Kim MJ, Zhao J, Yamanaka T,
Pappalardo Z, Clarke SL, Wenger AM, Nguyen L, Gurrieri F, Everman
DB, Schwartz CE, Birk OS, Bejerano G, Lomvardas S, Ahituv N
TITLE Coding exons function as tissue-specific enhancers of nearby genes.
JOURNAL Genome Res. 2012 Jun;22(6):1059-68. Epub 2012 Mar 22.
PUBMED 22442009
REFERENCE 2 (bases 1 to 7602)
TITLE Direct Submission
REFERENCE 3 (bases 1 to 7602)
AUTHORS .
TITLE Direct Submission
COMMENT SGRef: number: 1; type: "Journal Article"; journalName: "Genome
Res."; date: "2012-06"; volume: "22(6)"; pages: "1059-68. Epub 2012
Mar 22"
COMMENT SGRef: number: 2; type: "Journal Article"
FEATURES Location/Qualifiers
source 1..7602
/mol_type="other DNA"
/organism="synthetic DNA construct"
promoter complement(287..391)
/label=AmpR promoter
rep_origin complement(417..872)
/direction=LEFT
/label=f1 ori
/note="f1 bacteriophage origin of replication; arrow
indicates direction of (+) strand synthesis"
primer_bind 1014..1030
/label=M13 fwd
/note="common sequencing primer, one of multiple similar
variants"
promoter 1040..1058
/label=T7 promoter
/note="promoter for bacteriophage T7 RNA polymerase"
intron 3555..4127
/label=beta-globin intron
/note="intron from rabbit beta-globin gene"
CDS 4207..4923
/codon_start=1
/label=EGFP
/note="enhanced GFP"
/translation="MVSKGEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTL
KFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTIFFKDD
GNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIK
VNFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSALSKDPNEKRDHMVLL
EFVTAAGITLGMDELYK"
polyA_signal complement(4971..5105)
/label=SV40 poly(A) signal
/note="SV40 polyadenylation signal"
primer_bind complement(5775..5791)
/label=SK primer
/note="common sequencing primer, one of multiple similar
variants"
promoter complement(5828..5846)
/label=T3 promoter
/note="promoter for bacteriophage T3 RNA polymerase"
primer_bind complement(5867..5883)
/label=M13 rev
/note="common sequencing primer, one of multiple similar
variants"
protein_bind complement(5891..5907)
/label=lac operator
/note="The lac repressor binds to the lac operator to
inhibit transcription in E. coli. This inhibition can be
relieved by adding lactose or
isopropyl-beta-D-thiogalactopyranoside (IPTG)."
promoter complement(5915..5945)
/label=lac promoter
/note="promoter for the E. coli lac operon"
protein_bind complement(5960..5981)
/label=CAP binding site
/note="CAP binding activates transcription in the presence
of cAMP."
rep_origin complement(6269..6857)
/direction=LEFT
/label=ori
/note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
replication"
CDS complement(join(7031..7602,1..286))
/codon_start=1
/label=AmpR
/note="beta-lactamase"
/translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGYI
ELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRIDAGQEQLGRRIHYSQNDLVEYS
PVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRW
EPELNEAIPNDERDTTMPVAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSA
LPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIAEIGAS
LIKHW"