pAdDeltaF6 vector (V000011)

Price Information

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Two tubes of lyophilized plasmid will be delivered, each tube is about 5µg.

Basic Vector Information

Vector Name:
pAdDeltaF6
Antibiotic Resistance:
Ampicillin
Length:
15420 bp
Type:
AAV
Replication origin:
ori
Copy Number:
Low Copy
Promoter:
tet

pAdDeltaF6 vector Map

pAdDeltaF615420 bp70014002100280035004200490056006300700077008400910098001050011200119001260013300140001470015400SK primerT3 promoterM13 revlac operatorlac promoterCAP binding siteL4440oriAmpRAmpR promoterpBRforEcotet promoterITREarly 4 ORF1 proteinEarly 4 ORF3 proteinEarly 4 ORF6 proteinFiber proteinPre-hexon-linking protein VIIIShutoff proteinDNA-binding protein

Plasmid Protocol

1. Centrifuge at 5,000×g for 5 min.

2. Carefully open the tube and add 20 μl of sterile water to dissolve the DNA.

3. Close the tube and incubate for 10 minutes at room temperature.

4. Briefly vortex the tube and then do a quick spin to concentrate the liquid at the bottom. Speed is less than 5000×g.

5. Store the plasmid at -20 ℃.

6. The concentration of plasmid re-measurement sometimes differs from the nominal value, which may be due to the position of the lyophilized plasmid in the tube, the efficiency of the re-dissolution, the measurement bias, and adsorption on the wall of the tube, therefore, it is recommended to transform and extract the plasmid before using it

General Plasmid Transform Protocol

1. Take one 100μl of the competent cells and thaw it on ice for 10min, add 2μl of plasmid, then ice bath for 30min, then heat-shock it at 42℃ for 60s, do not stir, and then ice bath for 2min.

2. Add 900μl of LB liquid medium without antibiotics, and incubate at 37℃ for 45min (30℃ for 1-1.5 hours) with 180rpm shaking.

3. Centrifuge at 6000rpm for 5min, leave only 100μl of supernatant to resuspend the bacterial precipitate and spread it onto the target plasmid-resistant LB plate.

4. Invert the plate and incubate at 37℃ for 14h, or at 30℃ for 20h.

5. Pick a single colony into LB liquid medium, add the corresponding antibiotics, incubate at 220rpm for 14h, and extract the plasmid according to the experimental needs and the instructions of the plasmid extraction kit.

pAdDeltaF6 vector Sequence

LOCUS       V000011                15420 bp    DNA     circular SYN 19-OCT-2021
DEFINITION  Exported.
ACCESSION   V000011
VERSION     V000011
KEYWORDS    pAdDeltaF6
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
            .
REFERENCE   1  (bases 1 to 15420)
  TITLE     AAV packaging plasmids
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 15420)
  TITLE     Direct Submission
REFERENCE   3  (bases 1 to 15420)
  AUTHORS   .
  TITLE     Direct Submission
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName:
            "Unpublished"
            SGRef: number: 2; type: "Journal Article"
FEATURES             Location/Qualifiers
     source          1..15420
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     primer_bind     complement(142..158)
                     /label="SK primer"
                     /note="common sequencing primer, one of multiple similar
                     variants"
     promoter        complement(195..213)
                     /label="T3 promoter"
                     /note="promoter for bacteriophage T3 RNA polymerase"
     primer_bind     complement(234..250)
                     /label="M13 rev"
                     /note="common sequencing primer, one of multiple similar
                     variants"
     protein_bind    complement(258..274)
                     /label="lac operator"
                     /note="The lac repressor binds to the lac operator to
                     inhibit transcription in E. coli. This inhibition can be
                     relieved by adding lactose or
                     isopropyl-beta-D-thiogalactopyranoside (IPTG)."
     promoter        complement(282..312)
                     /label="lac promoter"
                     /note="promoter for the E. coli lac operon"
     protein_bind    complement(327..348)
                     /label="CAP binding site"
                     /note="CAP binding activates transcription in the presence
                     of cAMP."
     primer_bind     complement(465..482)
                     /label="L4440"
                     /note="L4440 vector, forward primer"
     rep_origin      complement(636..1224)
                     /direction=LEFT
                     /label="ori"
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of
                     replication"
     CDS             complement(1398..2255)
                     /label="AmpR"
                     /note="beta-lactamase"
     promoter        complement(2256..2360)
                     /label="AmpR promoter"
     primer_bind     2428..2446
                     /label="pBRforEco"
                     /note="pBR322 vectors, upsteam of EcoRI site, forward
                     primer"
     promoter        2473..2501
                     /label="tet promoter"
                     /note="E. coli promoter for tetracycline efflux protein
                     gene"
     repeat_region   3013..3115
                     /label="ITR"
                     /note="inverted terminal repeat of human adenovirus
                     serotype 5"
     CDS             3425..3808
                     /note="Early 4 ORF1 protein from Human adenovirus C
                     serotype 2. Accession#: P03242"
                     /label="Early 4 ORF1 protein"
     CDS             4248..4595
                     /note="Early 4 ORF3 protein from Human adenovirus C
                     serotype 2. Accession#: P03241"
                     /label="Early 4 ORF3 protein"
     CDS             4874..5755
                     /note="Early 4 ORF6 protein from Human adenovirus C
                     serotype 2. Accession#: P03239"
                     /label="Early 4 ORF6 protein"
     CDS             complement(6167..7909)
                     /note="Fiber protein from Human adenovirus C serotype 5.
                     Accession#: P11818"
                     /label="Fiber protein"
     CDS             complement(8444..9124)
                     /gene="L4"
                     /label="Pre-hexon-linking protein VIII"
                     /note="Pre-hexon-linking protein VIII from Human adenovirus
                     C serotype 5. Accession#: P24936"
     CDS             complement(9811..12231)
                     /gene="L4"
                     /label="Shutoff protein"
                     /note="Shutoff protein from Human adenovirus C serotype 5.
                     Accession#: P24933"
     CDS             12260..13846
                     /gene="DBP"
                     /label="DNA-binding protein"
                     /note="DNA-binding protein from Human adenovirus C serotype
                     5. Accession#: P03265"