YFV-C3opt vector (V001483)

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LOCUS       40924_49692       12840 bp DNA     circular SYN 18-DEC-2018
DEFINITION  VEEV replicon vector YFV-C3opt, complete sequence.
ACCESSION   .
VERSION     .
KEYWORDS    .
SOURCE      synthetic DNA construct
  ORGANISM  synthetic DNA construct
REFERENCE   1  (bases 1 to 12840)
  AUTHORS   Shustov AV, Frolov IV.
  TITLE     Trans-packaging of Yellow Fever virus replicons: an approach for 
            flaviviral antigen production
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 12840)
  AUTHORS   Shustov AV, Frolov IV.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-DEC-2005) Department of Microbiology and Immunology, 
            University of Texas Medical Branch, 301 University Boulevard, 
            Galveston, TX 77550-1019, USA
REFERENCE   3  (bases 1 to 12840)
  TITLE     Direct Submission
REFERENCE   4  (bases 1 to 12840)
  AUTHORS   .
  TITLE     Direct Submission
COMMENT     SGRef: number: 1; type: "Journal Article"; journalName: 
            "Unpublished"
COMMENT     SGRef: number: 2; type: "Journal Article"; journalName: "Submitted 
            (10-DEC-2005) Department of Microbiology and Immunology, University 
            of Texas Medical Branch, 301 University Boulevard, Galveston, TX 
            77550-1019, USA"
COMMENT     SGRef: number: 3; type: "Journal Article"
FEATURES             Location/Qualifiers
     source          1..12840
                     /mol_type="other DNA"
                     /organism="synthetic DNA construct"
     source          7934..9904
                     /mol_type="other DNA"
                     /db_xref="taxon:11090"
                     /organism="Yellow fever virus 17D"
     misc_feature    2..45
                     /note="5'UTR of Venezuelan equine encephalitis virus VEE
                     TC83"
     misc_feature    46..1650
                     /note="nsP1 of Venezuelan equine encephalitis virus VEE
                     TC83"
     RBS             1536..1544
                     /label=Shine-Dalgarno sequence
                     /note="full consensus sequence for ribosome-binding sites 
                     upstream of start codons in E. coli; complementary to a 
                     region in the 3' end of the 16S rRNA (Chen et al., 1994)"
     misc_feature    1651..4032
                     /note="nsP2 of Venezuelan equine encephalitis virus VEE
                     TC83"
     misc_feature    4033..5703
                     /note="nsP3 of Venezuelan equine encephalitis virus VEE
                     TC83"
     misc_feature    5704..7524
                     /note="nsP4 of Venezuelan equine encephalitis virus VEE
                     TC83"
     misc_feature    7502..7546
                     /note="subgenomic promoter of Venezuelan equine
                     encephalitis virus VEE TC83"
     misc_feature    7571..7933
                     /note="Yellow fever virus 17D capsid protein (synthetic, 
                     codon-optimized)"
     misc_feature    7934..8200
                     /label=PR of Yellow fever virus 17D
                     /note="PR of Yellow fever virus 17D"
     misc_feature    8201..8425
                     /label=M of Yellow fever virus 17D
                     /note="M of Yellow fever virus 17D"
     misc_feature    8426..9904
                     /label=E of Yellow fever virus 17D
                     /note="E of Yellow fever virus 17D"
     misc_feature    9910..9953
                     /note="subgenomic promoter of Venezuelan equine
                     encephalitis virus VEE TC83 (second copy)"
     CDS             9983..10579
                     /label=PuroR
                     /note="puromycin N-acetyltransferase"
     misc_feature    10659..11014
                     /note="3'UTR of Venezuelan equine encephalitis virus VEE
                     TC83"
     promoter        11078..11182
                     /label=AmpR promoter
     CDS             11183..12040
                     /label=AmpR
                     /note="beta-lactamase"
     rep_origin      12214..12802
                     /direction=RIGHT
                     /label=ori
                     /note="high-copy-number ColE1/pMB1/pBR322/pUC origin of 
                     replication"